Table 4 cluster quality Association between the size of the clusters and the quality and quantity of significant GO terms with different numbers of edges removed.
Dataset | Number of Edges Removed | Edges Removed % | GO per Cluster | GO per Node | Depth of GO per Node | Number of Clusters with no significant annotation |
|---|---|---|---|---|---|---|
Uetz | 30 | 2% | 0.7 | 0.1 | 4.9 | 120 |
Uetz | 57 | 4% | 0.8 | 0.1 | 4.9 | 120 |
Uetz | 100 | 7% | 0.9 | 0.1 | 4.9 | 121 |
Uetz | 200 | 13% | 1.1 | 0.2 | 4.8 | 137 |
Uetz | 400 | 27% | 3.5 | 0.7 | 4.5 | 261 |
Gavin | 57 | 1.5% | 2.1 | 0.1 | 4.6 | 23 |
Gavin | 400 | 15% | 3.4 | 0.2 | 4.7 | 24 |
Gavin | 800 | 25% | 2.8 | 0.3 | 4.6 | 59 |
Gavin | 1500 | 50% | 2.2 | 0.5 | 4.6 | 336 |
Lehner | 15 | 4% | 22.9 | 1.0 | 5.8 | 1 |
Lehner | 30 | 7% | 21.3 | 1.1 | 5.8 | 1 |
Lehner | 57 | 14% | 19.2 | 1.2 | 5.8 | 1 |
Lehner | 100 | 25% | 15.5 | 1.8 | 5.8 | 2 |