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Figure 2 | BMC Bioinformatics

Figure 2

From: EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments

Figure 2

Decision tree classification of all observed substitutions for Leucines. Similar trees are built for each of the 21 residue types, including half-cystine. The structural environment for a given cluster is defined by the edge labels along its path from the root cluster c0. For example, the nodes colored in gray indicate the partial classification path of a Leucine observed in a native structural environment whose descriptors s23, s15 and s10 verify s23 = pol = 3%, s15 = pac = 7% and s10 = d4 = 5.4A.

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