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Figure 1 | BMC Bioinformatics

Figure 1

From: A normalization strategy applied to HiCEP (an AFLP-based expression profiling) analysis: Toward the strict alignment of valid fragments across electrophoretic patterns

Figure 1

Electrophoretic patterns and the quality profiles for ten lanes from a primer combination of CT-tt. Samples are mouse embryonic stem (ES) cells 0, 12, 24, 48, and 96 h after differentiation. There are ten lanes since each sample are duplicated. From bottom to top: 0 h-1, 0 h-2, 12 h-1, 12 h-2, 24 h-1, 24 h-2, 48 h-1, 48 h-2, 96 h-1, and 96 h-2. Data from a primer combination of CT-tt in the interesting range (35–102 bp) are shown. (a) The approximated electrophoretic lane data and, (b) its interpolated quality profile. An example of calculation of quality profiles for lane 0 h-1 is shown in Table 1. Note the variation in the lengths of particular TDFs across peaks of lanes (red filled peaks).

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BMC Bioinformatics

ISSN: 1471-2105

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