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Figure 3 | BMC Bioinformatics

Figure 3

From: A normalization strategy applied to HiCEP (an AFLP-based expression profiling) analysis: Toward the strict alignment of valid fragments across electrophoretic patterns

Figure 3

Normalization for lane 0 h-2 in the dissimilar range (50–100 bp) in Fig. 1 (Model 2). Magnified expression profiles of the target 0 h-2 and the reference 96 h-2 in range (50–100 bp) are shown (top). Colours are the same as those in Fig. 1. There are 51 possible combinations in this case. The highest correlation coefficient between the best approximating profile and the reference in the range (50–100 bp) was 0.911 for the case x = 13. Visual evaluation of three representative approximate profiles (x = 0, 13, and 50) in the range confirmed the validity of the normalization (bottom).

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BMC Bioinformatics

ISSN: 1471-2105

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