Glucose-6-phosphate isomerase phylogeny. (A) Multiple alignment based (MAB) tree. (B) TULIP tree. Both trees were constructed using the BLOSUM 62 similarity matrix. For MAB tree construction, bootstrap support was estimated using 1000 replicates. To build TULIP trees, Z-scores were estimated with 2000 sequence shuffling. Topology supported by high bootstrap results in the MAB tree (figures in black), are consistently recovered in the corresponding pair-wise alignement based TULIP tree.