Classes | Description |
---|---|
SmallMolecule | A small molecule, such as ATP |
Complex | A binding complex between two or more molecules |
Protein | A protein molecule |
Chemical | A small molecule, protein or complex |
Reaction | Reaction between molecules: has substrates and products |
EnzymaticReaction | Associates a reaction to the enzyme that catalyze it |
Unit | Represents a unit, such as mol/l or /sec |
Parameter | Associates a value to its unit |
ConcentrationMeasurement | Associates a concentration to a molecule and the conditions of the measurement |
Pathway | A set of reactions and enzymatic reactions |
Model | A quantitative biochemical model, a set of reactions (or enzymatic reactions), initial concentrations for molecules in the model, rates of the reaction, kinetic parameters of the enzymatic reactions. |