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Table 3 SigPath benchmark measurement summary.

From: Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases

Minimum of four measurements

 

FO Min

KODO Min

Δ (KODO – FO)

%(FO/KODO) Min

Junit Tests

7809

14962

7153

52.19%

Boot

3026

3976

950

76.11%

SM Import

399189

409452

10263

97.49%

FullTextIndexer1

566858

1804663

1237805

31.41%

mam.xml

58999

299876

240877

19.67%

rod.xml

95680

422423

326743

22.65%

hum.xml

144250

692476

548226

20.83%

inv.xml

430107

1895850

1465743

22.69%

vrt.xml

97662

471683

374021

20.71%

sprot41_1.xml

332552

1763561

1431009

18.86%

sprot41_2.xml

441054

1966868

1525814

22.42%

FullText Indexer2

2655170

7521535

4866365

35.30%

hum.xml

144250

692476

548226

20.83%

XML Import

15859

25441

9582

62.34%

TestGetPathways

19658

21769

2111

90.30%

TestBenchmark

6840592

13531171

6690579

50.55%

Totals (ms)

12229818

30934447

18704629

39.53%

Average of four measurements

 

FO Avg

KODO Avg

%(FO/KODO) Avg

FO/KODO CV

Junit Tests

7875

15414

51.11%

2

Boot

3064

4319

71.67%

12

SM Import

402303

413655

97.26%

1

FullText Indexer1

572934

1818548

31.51%

1

mam.xml

59745

303455

19.69%

3

rod.xml

98938

429661

23.02%

3

hum.xml

152827

698456

21.89%

5

inv.xml

434253

1915082

22.68%

1

vrt.xml

100248

476812

21.03%

4

sprot41_1.xml

351278

1780467

19.72%

9

sprot41_2.xml

473765

1981667

23.90%

11

FullText Indexer2

2765967

7590177

36.43%

4

XML Import

16804

39913

45.44%

36

TestGetPathways

20388

24362

84.19%

10

TestBenchmark

6886598

13736330

50.16%

3

Totals (ms)

12346986

31228318

39.54%

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