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Table 3 SigPath benchmark measurement summary.

From: Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases

Minimum of four measurements
  FO Min KODO Min Δ (KODO – FO) %(FO/KODO) Min
Junit Tests 7809 14962 7153 52.19%
Boot 3026 3976 950 76.11%
SM Import 399189 409452 10263 97.49%
FullTextIndexer1 566858 1804663 1237805 31.41%
mam.xml 58999 299876 240877 19.67%
rod.xml 95680 422423 326743 22.65%
hum.xml 144250 692476 548226 20.83%
inv.xml 430107 1895850 1465743 22.69%
vrt.xml 97662 471683 374021 20.71%
sprot41_1.xml 332552 1763561 1431009 18.86%
sprot41_2.xml 441054 1966868 1525814 22.42%
FullText Indexer2 2655170 7521535 4866365 35.30%
hum.xml 144250 692476 548226 20.83%
XML Import 15859 25441 9582 62.34%
TestGetPathways 19658 21769 2111 90.30%
TestBenchmark 6840592 13531171 6690579 50.55%
Totals (ms) 12229818 30934447 18704629 39.53%
Average of four measurements
  FO Avg KODO Avg %(FO/KODO) Avg FO/KODO CV
Junit Tests 7875 15414 51.11% 2
Boot 3064 4319 71.67% 12
SM Import 402303 413655 97.26% 1
FullText Indexer1 572934 1818548 31.51% 1
mam.xml 59745 303455 19.69% 3
rod.xml 98938 429661 23.02% 3
hum.xml 152827 698456 21.89% 5
inv.xml 434253 1915082 22.68% 1
vrt.xml 100248 476812 21.03% 4
sprot41_1.xml 351278 1780467 19.72% 9
sprot41_2.xml 473765 1981667 23.90% 11
FullText Indexer2 2765967 7590177 36.43% 4
XML Import 16804 39913 45.44% 36
TestGetPathways 20388 24362 84.19% 10
TestBenchmark 6886598 13736330 50.16% 3
Totals (ms) 12346986 31228318 39.54%