Table 1 CoPub Mapper gene and keyword database information. Gene names, symbols and aliases were retrieved from Affymetrix HG_U95 / HG_U133 [54] and the HUGO databases [55]. The keyword thesauri include the three Gene Ontology subsections [41], diseases [56] and tissues/organs [57].
From: CoPub Mapper: mining MEDLINE based on search term co-publication
Thesaurus | Data Source | Number of terms | Number of terms with MEDLINE hits | Total number of MEDLINE citations |
|---|---|---|---|---|
Gene | Affymetrix HG_U95-133 HUGO | 15,621 | 10,700 | 5,932,448 |
Molecular Function | Gene Ontology | 962 | 851 | 6,616,546 |
Cellular Component | Gene Ontology | 218 | 196 | 1,890,561 |
Biological Process | Gene Ontology | 767 | 621 | 3,455,950 |
Diseases | Karolinska Institute | 1475 | 1444 | 6,099,280 |
Tissues | National Library of Medicine | 309 | 307 | 9,083,831 |