CoPub Mapper: mining MEDLINE based on search term co-publication

BMC Bioinformatics

Table 5 CoPub Mapper single gene biological concept output. Output of the "Single Gene Biological Term Mapper" in which the top ten genes co-published with the prostate cancer disease-keyword are listed according to number of co-publications.

Gene name	Gene Symbols	Gene Aliases	Number of hits	log10 Relative Score
kallikrein 3, prostate specific antigen	KLK3	PSA	6628	2.55
aminopeptidase puromycin sensitive	NPEPPS	MP100, PSA	4507	2.57
androgen receptor, dihydrotestosterone receptor		DHTR, NR3C4	932	1.93
acid phosphatase, prostate	ACPP		546	2.22
gonadotropin-releasing hormone	GNRH1	GNRH, GRH, LHRH, LNRH	522	1.24
1, leutinizing-releasing hormone tumor protein p53	TP53	P53	431	0.96
B-cell CLL/lymphoma 2	BCL2		346	1.17
insulin	INS		318	0.05
epidermal growth factor, beta- urogastrone	EGF	URG	251	0.72
cyclin-dependent kinase inhibitor 1A	CDKN1A	CAP20, CDKN1, CIP1, MDA-6, P21, SDI1, WAF1	190	0.98

ISSN: 1471-2105