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Table 3 Performance of seven protein multi-alignment programs on the BAliBASE benchmark database using sum-of-pairs scores as evaluation criterion.

From: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment

Method ref1 ref2 ref3 ref4 ref5 Total
DIALIGN-T 82.76% 91.28% 75.34% 86.43% 93.30% 84.69%
DIALIGN 2.2 81.40% 89.56% 68.93% 91.24% 94.14% 83.59%
T-COFFEE 1.37 84.67% 93.24% 80.32% 75.80% 96.20% 85.95%
PROBCONS 1.09 90.37% 94.61% 84.34% 89.20% 98.07% 91.11%
POA V2 74.66% 88.32% 63.14% 82.62% 76.71% 76.76%
MUSCLE 3.5 88.25% 93.59% 82.36% 85.62% 97.80% 89.21%
CLUSTAL W 1.83 86.43% 93.22% 75.79% 81.09% 86.10% 86.15%