Table 3 Performance of seven protein multi-alignment programs on the BAliBASE benchmark database using sum-of-pairs scores as evaluation criterion.
From: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Method | ref1 | ref2 | ref3 | ref4 | ref5 | Total |
|---|---|---|---|---|---|---|
DIALIGN-T | 82.76% | 91.28% | 75.34% | 86.43% | 93.30% | 84.69% |
DIALIGN 2.2 | 81.40% | 89.56% | 68.93% | 91.24% | 94.14% | 83.59% |
T-COFFEE 1.37 | 84.67% | 93.24% | 80.32% | 75.80% | 96.20% | 85.95% |
PROBCONS 1.09 | 90.37% | 94.61% | 84.34% | 89.20% | 98.07% | 91.11% |
POA V2 | 74.66% | 88.32% | 63.14% | 82.62% | 76.71% | 76.76% |
MUSCLE 3.5 | 88.25% | 93.59% | 82.36% | 85.62% | 97.80% | 89.21% |
CLUSTAL W 1.83 | 86.43% | 93.22% | 75.79% | 81.09% | 86.10% | 86.15% |