Table 4 Performance of seven protein multi-alignment programs on BAliBASE using column scores.
From: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Method | ref1 | ref2 | ref3 | ref4 | ref5 | Total |
|---|---|---|---|---|---|---|
DIALIGN-T | 73.22% | 43.43% | 44.69% | 66.13% | 77.05% | 65.65% |
DIALIGN 2.2 | 71.49% | 37.42% | 35.03% | 81.88% | 84.47% | 64.82% |
T-COFFEE 1.37 | 75.32% | 53.44% | 52.20% | 45.09% | 86.96% | 68.20% |
PROBCONS 1.09 | 83.21% | 59.76% | 61.34% | 71.09% | 91.86% | 77.23% |
POA V2 | 63.21% | 39.02% | 25.57% | 57.22% | 47.18% | 54.18% |
MUSCLE 3.5 | 80.79% | 56.37% | 56.74% | 62.65% | 91.57% | 74.13% |
CLUSTAL W 1.83 | 78.39% | 56.24% | 48.87% | 50.44% | 63.89% | 68.48% |