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Table 4 Performance of seven protein multi-alignment programs on BAliBASE using column scores.

From: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment

Method ref1 ref2 ref3 ref4 ref5 Total
DIALIGN-T 73.22% 43.43% 44.69% 66.13% 77.05% 65.65%
DIALIGN 2.2 71.49% 37.42% 35.03% 81.88% 84.47% 64.82%
T-COFFEE 1.37 75.32% 53.44% 52.20% 45.09% 86.96% 68.20%
PROBCONS 1.09 83.21% 59.76% 61.34% 71.09% 91.86% 77.23%
POA V2 63.21% 39.02% 25.57% 57.22% 47.18% 54.18%
MUSCLE 3.5 80.79% 56.37% 56.74% 62.65% 91.57% 74.13%
CLUSTAL W 1.83 78.39% 56.24% 48.87% 50.44% 63.89% 68.48%