Table 7 Percentage of sequence families where DIALIGN-T is outperformed on BAliBASE 2.1 by other methods according to the sum-of-pairs score. Notation is as in Table 5.
From: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Method | ref1 | ref2 | ref3 | ref4 | ref5 | Total |
|---|---|---|---|---|---|---|
DIALIGN 2.2 | 28.05%+ | 21.74%+ | 16.67%+ | 16.67%0 | 41.67%0 | 26.24%+ |
T-COFFEE 1.37 | 58.54%- | 86.96%- | 75.00%- | 25.00%0 | 50.00%0 | 60.99%- |
PROBCONS 1.09 | 71.95%- | 82.61%- | 100.00%- | 33.33%0 | 75.00%- | 80.14%- |
POA V2 | 20.73%+ | 34.78%+ | 16.67%+ | 33.33%0 | 0.00%+ | 21.99%+ |
MUSCLE 3.5 | 71.95%- | 73.91%- | 83.33%- | 25.00%0 | 75.00%- | 69.50%- |
CLUSTAL W 1.83 | 53.66%- | 56.52%0 | 58.33%0 | 16.67%0 | 8.33%+ | 47.52%0 |