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Table 7 Percentage of sequence families where DIALIGN-T is outperformed on BAliBASE 2.1 by other methods according to the sum-of-pairs score. Notation is as in Table 5.

From: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment

Method ref1 ref2 ref3 ref4 ref5 Total
DIALIGN 2.2 28.05%+ 21.74%+ 16.67%+ 16.67%0 41.67%0 26.24%+
T-COFFEE 1.37 58.54%- 86.96%- 75.00%- 25.00%0 50.00%0 60.99%-
PROBCONS 1.09 71.95%- 82.61%- 100.00%- 33.33%0 75.00%- 80.14%-
POA V2 20.73%+ 34.78%+ 16.67%+ 33.33%0 0.00%+ 21.99%+
MUSCLE 3.5 71.95%- 73.91%- 83.33%- 25.00%0 75.00%- 69.50%-
CLUSTAL W 1.83 53.66%- 56.52%0 58.33%0 16.67%0 8.33%+ 47.52%0