Table 8 Percentage of sequence families where DIALIGN-T is outperformed on BAliBASE 2.1 by other methods according to the column score. Notation as in Table 5.
From: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Method | ref1 | ref2 | ref3 | ref4 | ref5 | Total |
|---|---|---|---|---|---|---|
DIALIGN 2.2 | 26.83%+ | 13.04%+ | 16.67%+ | 16.67%0 | 50.00%0 | 24.82%+ |
T-COFFEE 1.37 | 56.10%- | 73.91%- | 66.67%0 | 25.00%0 | 50.00%0 | 56.74%- |
PROBCONS 1.09 | 80.49%- | 82.61%- | 75.00%- | 25.00%0 | 66.67%- | 74.47%- |
POA V2 | 20.73%+ | 26.09%0 | 08.33%+ | 16.67%0 | 00.00%+ | 18.44%+ |
MUSCLE 3.5 | 73.17%- | 73.91%- | 83.33%- | 16.67%0 | 66.67%- | 68.79%- |
CLUSTAL W 1.83 | 52.44%- | 69.57%- | 50.00%0 | 16.67%0 | 08.33%+ | 48.23%0 |