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Table 3 Univariate Analysis of Variance (ANOVA) using each time as dependent variable each one of the 5 measures of accuracy.

From: Evaluation of methods for predicting the topology of β-barrel outer membrane proteins and a consensus prediction method

 

Qβ

Cβ

SOV

Correctly predicted topologies

Correctly predicted barrel size

A.

F

p-value

F

p-value

F

p-value

F

p-value

F

p-value

overall

15.8

<10-4

13.55

<10-4

13.33

<10-4

19.07

<10-4

27.34

<10-4

type

0

0.9444

5.25

0.0224

56.86

<10-4

5.51

0.0193

14.97

0.0001

method

31.26

<10-4

26.97

<10-4

20.25

<10-4

38.49

<10-4

54.14

<10-4

type*method

1.93

0.0402

0.96

0.4758

2.05

0.0272

1.01

0.4318

1.77

0.0645

B.

          

overall

27.13

<10-4

32.43

<10-4

58.18

<10-4

72.27

<10-4

123.71

<10-4

type

0.06

0.8144

3.49

0.0625

45.22

<10-4

4.33

0.0379

12.28

0.0005

hmm

77.59

<10-4

91.52

<10-4

113.97

<10-4

212.4

<10-4

358.84

<10-4

type*hmm

3.8

0.052

1.79

0.1822

10.83

0.0011

0.01

0.9428

0.1

0.7502

  1. A. Model that includes as independent variables the individual methods (11 factors), the type of the sequence (barrel/precursor) and their interaction term. B. Model that includes as independent variables the type of the method (HMM/not-HMM), the type of the sequence (barrel/precursor) and their interaction term. We report the F statistic (F) of the ANOVA test and the corresponding p-value (p-value).