Accelerated probabilistic inference of RNA structure evolution

BMC Bioinformatics

Table 5 The subset of RFAM used to test the constrained SCFG algorithms.

RFAM family	Seauence (EMBL.ID / startpoint-endpoint)		Alignment		Basepair
	X	Y	sens.	spec.	sens.	spec.
S15	AE004150.1/7123-7243	AE004888.1/2785-2659	0.65	0.752	0.462	0.353
S15	AE005545.1/3797-3683	AE004888.1/2785-2659	0.652	0.701	0.615	0.4
U3	U27297.1/2-180	AF277396.1/3-126	0.252	0.248	0.0833	0.087
glmS	AL935254.1/94449-94600	AE010557.1/24-169	0.603	0.599	0.667	0.595
glmS	AE010557.1/24-169	AE013165.1/2616-2459	0.532	0.587	0.545	0.667
glmS	AL596166.1/50734-50929	AE013165.1/2616-2459	0.873	0.873	0.757	0.7
glmS	AC078934.3/32621-32405	AE010557.1/24-169	0.869	0.863	0.756	0.689
glmS	AL935254.1/94449-94600	AE013165.1/2616-2459	0.715	0.715	0.811	0.769
Purine	AE007775.1/3558-3459	AL591981.1/205922-205823	0.869	0.869	0.773	0.81
Purine	AL591981.1/205922-205823	AP004595.1/160373-160472	0.838	0.838	0.591	0.5
Purine	AE007775.1/3558-3459	AE010606.1/4680-4581	0.67	0.699	0.636	0.875
Purine	AP003194.2/163700-163601	AE016809.1/202496-202595	0.84	0.866	0.857	0.75
U5	M16510.1/245-451	AF095839.1/890-777	0.584	0.579	0.667	0.8
U5	X63789.1/2236-2349	AF095839.1/890-777	0.716	0.69	0.8	0.8
IRE	AY112742.1/12-41	S57280.1/391-417	0.667	0.667	0.6	0.75
IRE	AF266195.1/14-43	X01060.1/3950-3976	0.963	0.963	0.9	0.9
IRE	S57280.1/391-417	X13753.1/1434-1460	1	1	0.6	0.6
IRE	AY112742.1/12-41	X13753.1/1434-1460	0.778	0.778	0.8	0.727
IRE	AF266195.1/14-43	AF171078.1/1416-1442	0.963	0.963	0.7	0.7
IRE	AF171078.1/1416-1442	X01060.1/3950-3976	1	1	0.7	0.875
6S	Y00334.1/77-254	AL627277.1/108623-108805	0.869	0.869	0.811	0.754
6S	AE004317.1/5626-5807	AL627277.1/108623-108805	0.777	0.777	0.736	0.709

ISSN: 1471-2105