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Table 5 The subset of RFAM used to test the constrained SCFG algorithms.

From: Accelerated probabilistic inference of RNA structure evolution

RFAM family Seauence (EMBL.ID / startpoint-endpoint) Alignment Basepair
  X Y sens. spec. sens. spec.
S15 AE004150.1/7123-7243 AE004888.1/2785-2659 0.65 0.752 0.462 0.353
S15 AE005545.1/3797-3683 AE004888.1/2785-2659 0.652 0.701 0.615 0.4
U3 U27297.1/2-180 AF277396.1/3-126 0.252 0.248 0.0833 0.087
glmS AL935254.1/94449-94600 AE010557.1/24-169 0.603 0.599 0.667 0.595
glmS AE010557.1/24-169 AE013165.1/2616-2459 0.532 0.587 0.545 0.667
glmS AL596166.1/50734-50929 AE013165.1/2616-2459 0.873 0.873 0.757 0.7
glmS AC078934.3/32621-32405 AE010557.1/24-169 0.869 0.863 0.756 0.689
glmS AL935254.1/94449-94600 AE013165.1/2616-2459 0.715 0.715 0.811 0.769
Purine AE007775.1/3558-3459 AL591981.1/205922-205823 0.869 0.869 0.773 0.81
Purine AL591981.1/205922-205823 AP004595.1/160373-160472 0.838 0.838 0.591 0.5
Purine AE007775.1/3558-3459 AE010606.1/4680-4581 0.67 0.699 0.636 0.875
Purine AP003194.2/163700-163601 AE016809.1/202496-202595 0.84 0.866 0.857 0.75
U5 M16510.1/245-451 AF095839.1/890-777 0.584 0.579 0.667 0.8
U5 X63789.1/2236-2349 AF095839.1/890-777 0.716 0.69 0.8 0.8
IRE AY112742.1/12-41 S57280.1/391-417 0.667 0.667 0.6 0.75
IRE AF266195.1/14-43 X01060.1/3950-3976 0.963 0.963 0.9 0.9
IRE S57280.1/391-417 X13753.1/1434-1460 1 1 0.6 0.6
IRE AY112742.1/12-41 X13753.1/1434-1460 0.778 0.778 0.8 0.727
IRE AF266195.1/14-43 AF171078.1/1416-1442 0.963 0.963 0.7 0.7
IRE AF171078.1/1416-1442 X01060.1/3950-3976 1 1 0.7 0.875
6S Y00334.1/77-254 AL627277.1/108623-108805 0.869 0.869 0.811 0.754
6S AE004317.1/5626-5807 AL627277.1/108623-108805 0.777 0.777 0.736 0.709