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Figure 8 | BMC Bioinformatics

Figure 8

From: Comparative mapping of sequence-based and structure-based protein domains

Figure 8

A series of SCOP domains are mapped to a Pfam family. (A) The Pfam family ACR_tran (AcrB/AcrD/AcrF family) corresponds to eight SCOP domain families for PDBID 1iwgA, three of which are unique. The regions marked with red and pink are two copies of the SCOP domain family d.225.1.1 (Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains), marked with yellow and orange are two copies of the SCOP domain family f.35.1.1 (Multidrug efflux transporter AcrB transmembrane domain), and the rest are four copies of the SCOP domain family d.58.44.1 (Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains). (B) The Pfam family Glyco_hydro_42 (Beta-galactosidase) mapped to a series of the SCOP domain families {c.1.8.1 (Amylase, catalytic domain), c.23.16.5 (A4 beta-galactosidase middle domain), b.71.1.1 (alpha-Amylases, C-terminal beta-sheet domain)} in PDB protein 1kwgA. They are marked in cyan, green and blue, respectively.

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