Table 3 Examples for cases where a Pfam family corresponds to a SCOP superfamily.
From: Comparative mapping of sequence-based and structure-based protein domains
Pfam | Type | SCOP |
|---|---|---|
DHH | Family | c.107.1.1; c.107.1.2 |
OsmC | Family | d.227.1.2; d.227.1.1 |
Pec_lyase_C | Domain | b.80.1.2; b.80.1.1 |
Glyoxalase | Domain | d.32.1.3; d.32.1.1; d.32.1.4; d.32.1.2 |
TOBE | Domain | b.40.6.1; b.40.6.3; b.40.6.2 |
HhH-GPD | Domain | a.96.1.2; a.96.1.3; a.96.1.1 |
NAD_binding_1 | Domain | c.25.1.4; c.25.1.1; c.25.1.5; c.25.1.2 |
Glyco_hydro_15 | Family | a.102.1.1; a.102.1.5 |
Ricin_B_lectin | Repeat | b.42.2.1; b.42.2.2 |
Prenyltrans | Repeat | a.102.4.3; a.102.4.2 |
HHH | Motif | a.60.2.1; a.60.4.1; a.60.2.3; a.60.2.2 |