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Table 2 Analysis of InterPro domain composition in clusters calculated for SwissProt database

From: Super paramagnetic clustering of protein sequences

K cases clusters true positive false positive false negative specificity a posteriori sensitivity a priori sensitivity
SPC
2 18960 4423 39414 1239 988 96.7 97.6 16.7
6 78441 11418 159201 6045 8474 96.3 94.9 67.6
20 96716 6635 185012 11514 20464 94.1 90.0 78.5
64 98568 3739 170364 18864 36143 90.0 82.5 72.3
all NN 91452 3420 155239 16206 32472 90.6 82.7 65.9
TRIBE-MCL
  97792 6755 191500 12764 16939 93.8 91.9 81.3
gSPC
6 79406 9543 162210 6208 7709 96.3 95.5 68.8
20 100458 2803 201766 9634 12402 95.4 94.2 86.6
64 103585 427 207131 10312 13264 95.3 94.0 87.9
All NN 103729 30 207339 10362 13304 95.2 94.0 88