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Table 3 Performance of RSmatch in the HSL3 experimenta

From: A method for aligning RNA secondary structures and its application to RNA motif detection

Cutoff Score

Selected Hitsb

True Positives

Specificity

Sensitivityc

14

33

33

100.0%

53.2%

12

47

45

95.7%

72.6%

10

69

46

66.7%

74.2%

8

184

56

30.4%

90.3%

  1. aPatSearch has a specificity of 98.2% and sensitivity of 87.1%.
  2. bHits whose scores are greater than or equal to the cutoff value used in this study are selected.
  3. cAssume there are 62 mRNA structures containing the HSL3 motif, which include all histone mRNAs found by RSmatch and PatSearch.
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BMC Bioinformatics

ISSN: 1471-2105

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