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Table 4 IRE experiment results

From: A method for aligning RNA secondary structures and its application to RNA motif detection

True Positive

RefSeq ID

Location by PatSearch

RSmatch

Rsearch

stemloc

   

Location

Score

Rank

Location

Score

Rank

Location

Score

Rank

x

NM_000032a

13–35

-

-

-

-

-

-

-

-

-

x

NM_014585

203–229

202–231

21

1

202–231

34.11

1

202–226

13.021

5

x

NM_003234

3479–3511

3484–3506

19

2

3480–3510

31.42

2

3486–3503

15.936

2

x

NM_003234

3883–3913

3887–3909

17

3

3876–3925

27.80

6

3889–3906

10.914

7

x

NM_003234

3950–3976

3952–3974

17

3

3952–3974

25.50

10

3954–3971

10.476

9

x

NM_003234

3996–4024

3999–4021

17

3

3999–4022

28.53

4

4042–4048

1.149

25

x

NM_000146

19–41

20–40

16

6

7–51

27.84

5

17–41

8.574

12

 

NM_032484

2353–2376

2358–2373

13

7

2355–2377

22.26

11

2354–2375

16.411

1

x

NM_003234

3429–3461

3434–3456

13

7

3433–3458

26.40

8

3436–3453

6.218

15

 

NM_018992

2182–2205

2186–2202

12

9

2186–2202

18.43

19

2186–2202

11.459

6

 

NM_003449

2160–2180

2163–2178

11

10

2160–2180

26.27

9

2161–2181

13.198

4

 

NM_002081

3449–3469

3452–3467

11

10

3446–3472

20.47

17

3450–3470

8.290

14

 

NM_173649

1371–1398

1431–1446

7

12

1372–1398

18.83

18

1376–1396

8.493

13

 

NM_033337

1202–1226

1253–1257

5

13

1202–1227

21.52

14

1202–1227

4.540

18

 

NM_001234

1106–1130

1157–1161

5

13

1106–1131

21.52

15

1106–11331

4.540

19

 

NM_153706

174–194

108–119

5

13

171–198

17.49

20

219–234

4.400

20

 

NM_003607

6892–6914

6851–6854

4

16

6892–6914

21.98

12

6930–6950

10.827

8

 

NM_002086

82–102

126–129

4

16

94–117

16.48

22

101–125

2.833

22

 

NM_012256

2594–2617

2571–2574

4

16

2536–2570

20.76

16

2590–2606

1.770

24

x

NM_001098

1–23

17–19

3

19

1–23

30.67

3

3–20

14.185

3

 

NM_006731

4439–4465

4487–4489

3

19

4442–4462

21.65

13

4443–4460

9.920

10

 

NM_003672

2556–2576

2592–2594

3

19

2547–2587

26.44

7

2558–2574

9.049

11

 

NM_018234

2038–2058

2176–2178

3

19

2035–2061

14.11

24

2046–2058

4.986

16

 

NM_024076

1799–1822

1816–1818

3

19

1800–1821

15.00

23

1832–1850

4.876

17

 

NM_000877

3274–3294

3336–3338

3

19

3275–3293

13.81

25

3302–3321

3.182

21

 

NM_003675

2–27

27–31

3

19

1–29

16.74

21

21–31

1.980

23

 

NM_032323

1924–1944

1990–1992

3

19

1925–1943

12.43

26

1928–1948

0.678

26

  1. aNM_000032 is used as the query structure for RSmatch, Rsearch, and stemloc. Thus there is no value (shown as "-").