Table 10 The percentage of cases where STC is better than other tested methods in terms of RF distance. The number in parentheses is the percentage of cases where STC is worse than other tested methods. Methods are used with BNNI.
From: Shortest triplet clustering: reconstructing large phylogenies using representative sets
number sequences | NJ | BIONJ | Weighbor | HGT/FP | GME | BME |
|---|---|---|---|---|---|---|
96 (500 nt) | 9 (8) | 8 (8) | 10 (10) | 12 (10) | 10 (8) | 10 (9) |
500 (500 nt) | 34 (37) | 35 (39) | 35 (36) | 59 (29) | 46 (33) | 41 (39) |
500 (1000 nt) | 22 (19) | 17 (23) | 18 (22) | 23 (28) | 30 (20) | 24 (20) |
500 (2000 nt) | 10 (13) | 8 (7) | 10 (8) | 9 (8) | 12 (10) | 7 (10) |
1000 (1000 nt) | 30 (28) | 27 (29) | n.d. | 28 (22) | 30 (24) | 28 (27) |
5000 (1000 nt) | 48 (40) | 42 (44) | n.d. | 45 (45) | 52 (37) | 43 (43) |