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Table 2 PREP-Mt performance results subdivided by genus

From: PREP-Mt: predictive RNA editor for plant mitochondrial genes

Genus No. of Genes TP TN FP FN Specificity Sensitivity Accuracy Balanced Accuracy
Angiosperms
   Eudicots
Amphicarpaea 1 13 143 0 0 (0) 100.0 100.0 (100.0) 100.0 (100.0) 100.0 (100.0)
Arabidopsis 31 344 5880 58 89 (24) 99.0 79.4 (93.5) 97.7 (98.7) 89.2 (96.3)
Beta 30 299 5406 52 50 (11) 99.0 85.7 (96.5) 98.2 (98.9) 92.4 (97.7)
Brassica 32 362 5874 53 55 (15) 99.1 86.8 (96.0) 98.3 (98.9) 93.0 (97.6)
Cologania 1 13 138 1 1 (0) 99.3 92.9 (100.0) 98.7 (99.3) 96.1 (99.6)
Cucumis 2 19 332 7 0 (0) 97.9 100.0 (100.0) 98.0 (98.0) 99.0 (99.0)
Daucus 5 42 820 4 9 (4) 99.5 82.4 (91.3) 98.5 (99.1) 90.9 (95.4)
Dumasia 1 14 141 0 1 (0) 100.0 93.3 (100.0) 99.4 (100.0) 96.7 (100.0)
Euphorbia 1 1 53 0 0 (0) 100.0 100.0 (100.0) 100.0 (100.0) 100.0 (100.0)
Glycine 2 14 566 2 2 (0) 99.6 87.5 (100.0) 99.3 (99.7) 93.6 (99.8)
Gymnocladus 2 1 108 4 2 (1) 96.4 33.3 (50.0) 94.8 (95.6) 64.9 (73.2)
Helianthus 4 39 362 1 3 (1) 99.7 92.9 (97.5) 99.0 (99.5) 96.3 (98.6)
Lactuca 1 16 282 1 0 (0) 99.6 100.0 (100.0) 99.7 (99.7) 99.8 (99.8)
Lespedeza 1 13 142 0 0 (0) 100.0 100.0 (100.0) 100.0 (100.0) 100.0 (100.0)
Lupinus 6 68 484 3 3 (0) 99.4 95.8 (100.0) 98.9 (99.5) 97.6 (99.7)
Lycopersicon 4 52 550 1 21 (3) 99.8 71.2 (94.5) 96.5 (99.3) 85.5 (97.2)
Malus 1 8 47 0 0 (0) 100.0 100.0 (100.0) 100.0 (100.0) 100.0 (100.0)
Nicotiana 2 17 258 1 12 (3) 99.6 58.6 (85.0) 95.5 (98.6) 79.1 (92.3)
Oenothera 23 283 4395 58 95 (34) 98.7 74.9 (89.3) 96.8 (98.1) 86.8 (94.0)
Olea 2 11 249 0 1 (0) 100.0 91.7 (100.0) 99.6 (100.0) 95.8 (100.0)
Oxalis 1 2 51 0 3 (1) 100.0 40.0 (66.7) 94.6 (98.1) 70.0 (83.3)
Petunia 9 84 1132 8 24 (5) 99.3 77.8 (94.4) 97.4 (98.9) 88.5 (96.8)
Pisum 4 53 487 4 8 (0) 99.2 86.9 (100.0) 97.8 (99.3) 93.0 (99.6)
Podophyllum 2 3 96 5 8 (0) 95.0 27.3 (100.0) 88.4 (95.2) 61.2 (97.5)
Raphanus 5 31 453 3 6 (1) 99.3 83.8 (96.9) 98.2 (99.2) 91.6 (98.1)
Solanum 8 58 1259 16 21 (9) 98.7 73.4 (86.6) 97.3 (98.1) 86.1 (92.7)
Vitis 1 20 224 1 1 (0) 99.6 95.2 (100.0) 99.2 (99.6) 97.4 (99.8)
   Magnoliids
Magnolia 5 79 527 2 12 (3) 99.6 86.8 (96.3) 97.7 (99.2) 93.2 (98.0)
   Monocots
Acorus 1 8 143 2 0 (0) 98.6 100.0 (100.0) 98.7 (98.7) 99.3 (99.3)
Allium 2 24 131 2 0 (0) 98.5 100.0 (100.0) 98.7 (98.7) 99.2 (99.2)
Coix 2 23 121 0 3 (0) 100.0 88.5 (100.0) 98.0 (100.0) 94.2 (100.0)
Elymus 1 12 157 2 0 (0) 98.7 100.0 (100.0) 98.8 (98.8) 99.4 (99.4)
Hordeum 2 12 388 1 3 (1) 99.7 80.0 (92.3) 99.0 (99.5) 89.9 (96.0)
Oryza 34 395 5919 71 90 (28) 98.8 81.4 (93.4) 97.5 (98.5) 90.1 (96.1)
Ruscus 1 16 146 1 3 (2) 99.3 84.2 (88.9) 97.6 (98.2) 91.8 (94.1)
Secale 2 6 353 5 3 (0) 98.6 66.7 (100.0) 97.8 (98.6) 82.6 (99.3)
Sorghum 5 52 479 4 12 (1) 99.2 81.3 (98.1) 97.1 (99.1) 90.2 (98.6)
Triticum 26 360 4748 36 79 (13) 99.2 82.0 (96.5) 97.8 (99.0) 90.6 (97.9)
Zea 11 104 1933 16 23 (7) 99.2 81.9 (93.7) 98.1 (98.9) 90.5 (96.4)
Gymnosperms
   Cycas 3 35 444 7 14 (4) 98.4 71.4 (89.7) 95.8 (97.8) 84.9 (94.1)
   Pinus 2 32 123 5 3 (0) 96.1 91.4 (100.0) 95.1 (96.9) 93.8 (98.0)
Other
   Chaetosphaeridium 29 0 3011 49 0 (0) 98.4 - 98.4 (98.4) -
   Chara 30 0 3549 72 0 (0) 98.0 - 98.0 (98.0) -
   Marchantia 32 0 3852 51 0 (0) 98.7 - 98.7 (98.7) -
Overall 370 3,038 55,956 609 660 (171) 98.9 82.2 (94.7) 97.9 (98.7) 90.5 (96.8)
  1. Notes are the same as for Table 1.