PREP-Mt: predictive RNA editor for plant mitochondrial genes

BMC Bioinformatics

Table 3 Examples of unusually poor predictive results

Gene	Species	TP	FP	FN	Score
atp1	Secale cereale	0	5	1 (0)	0.96
cox3	Oryza sativa	1	13	0 (0)	0.93
rpl2	Arabidopsis thaliana	0	3	1 (0)	0.78
rpl2	Brassica napus	1	3	1 (0)	0.78
rpl2	Oenothera berteriana	1	5	3 (3)	0.67
rpl2	Oryza sativa	0	3	1 (1)	0.67
rps1	Oenothera berteriana	0	3	0 (0)	1.00
rps7	Arabidopsis thaliana	0	2	0 (0)	0.93
rps12	Oryza sativa	0	6	0 (0)	0.95
rps14	Brassica napus	0	3	0 (0)	0.67
sdh4	Gymnocladus dioica	0	4	0 (0)	0.68
sdh4	Podophyllum peltatum	1	4	4 (0)	0.68
Overall		4	54	11 (4)	0.83

Predicted score is averaged across all incorrectly predicted edited sites (FP). The numbers of FN after exclusion of silent editing sites are shown in parentheses.

ISSN: 1471-2105