Table 4 Samples of false negative matches: closest synonyms in synonym list, occurrence in text, and type of error.
From: A simple approach for protein name identification: prospects and limits
Synonym(s) | Occurrence in text | Type of error |
|---|---|---|
Lpa1, Lpa2, Lpa3 | lpa(1-3) | enumeration |
Pkcb, Pkce | PKC beta, PKC-epsilon | different spelling |
retinoic acid receptor, alpha | retinoic acid receptor-alpha | different spelling |
interferon gamma | gamma-interferon | inversion |
Braf2, Braf-rs1 | Braf | ambiguity |
peroxisome proliferator activated receptor gamma | peroxisome proliferating antigen receptor gamma | not evident |