TY - JOUR AU - Yeh, A. AU - Hirschman, L. AU - Morgan, A. AU - Colosimo, M. PY - 2005 DA - 2005// TI - BioCreAtIvE Task 1A: Gene Mention Finding Evaluation JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-S1-S2 DO - 10.1186/1471-2105-6-S1-S2 ID - Yeh2005 ER - TY - JOUR AU - Hirschman, L. AU - Colosimo, M. AU - Morgan, A. AU - Yeh, A. PY - 2005 DA - 2005// TI - Overview of BioCreAtIvE task 1B: Normalized Gene Lists JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-S1-S11 DO - 10.1186/1471-2105-6-S1-S11 ID - Hirschman2005 ER - TY - JOUR AU - Blaschke, C. AU - Andres, E. AU - Krallinger, M. AU - Valencia, A. PY - 2005 DA - 2005// TI - Evaluation of the BioCreAtIvE assessment task 2 JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-S1-S16 DO - 10.1186/1471-2105-6-S1-S16 ID - Blaschke2005 ER - TY - JOUR AU - Swanson, D. R. PY - 1988 DA - 1988// TI - Migraine and magnesium: Eleven neglected connections JO - Perspectives in Biology and Medicine VL - 31 UR - https://doi.org/10.1353/pbm.1988.0009 DO - 10.1353/pbm.1988.0009 ID - Swanson1988 ER - TY - JOUR AU - Swanson, D. R. PY - 1990 DA - 1990// TI - Somatomedin C and arginine: Implicit connections between mutually-isolated literatures JO - Perspectives in Biology and Medicine VL - 33 UR - https://doi.org/10.1353/pbm.1990.0031 DO - 10.1353/pbm.1990.0031 ID - Swanson1990 ER - TY - JOUR AU - Smalheiser, N. R. AU - Swanson, D. R. PY - 1994 DA - 1994// TI - Assessing a gap in the biomedical literature: Magnesium deficiency and neurologic disease JO - Neuroscience Research Communications VL - 15 ID - Smalheiser1994 ER - TY - JOUR AU - Andrade, M. AU - Valencia, A. PY - 1998 DA - 1998// TI - Automatic extraction of keywords from scientific texts: application to the knowledge domain of protein families JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.7.600 DO - 10.1093/bioinformatics/14.7.600 ID - Andrade1998 ER - TY - CHAP AU - Craven, M. AU - Kumlien, J. PY - 1999 DA - 1999// TI - Constructing biological knowledge bases by extracting information from text sources BT - Proceedings of ISMB 99 ID - Craven1999 ER - TY - JOUR AU - Marcotte, E. AU - Xenarios, I. AU - Eisenberg, D. PY - 2001 DA - 2001// TI - Mining literature for protein-protein interactions JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.4.359 DO - 10.1093/bioinformatics/17.4.359 ID - Marcotte2001 ER - TY - JOUR AU - Raychaudhuri, S. AU - Chang, J. AU - Sutphin, P. AU - Altman, R. PY - 2002 DA - 2002// TI - Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature JO - Genome Research VL - 12 UR - https://doi.org/10.1101/gr.199701 DO - 10.1101/gr.199701 ID - Raychaudhuri2002 ER - TY - STD TI - Donaldson I, Martin J, de Bruijn B, Wolting C, Lay V, Tuekam B, Zhang S, Baskin B, Bader G, Michalickova K, Pawson T, Hogue C: PreBIND and Textomy – mining the biomedical literature for protein-protein interactions using a support vector machine.BMC Bioinformatics4: 11. 10.1186/1471-2105-4-11 ID - ref11 ER - TY - JOUR AU - Nenadic, G. AU - Spasic, I. AU - Ananiadou, S. PY - 2003 DA - 2003// TI - Terminology-driven mining of biomedical literature JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg105 DO - 10.1093/bioinformatics/btg105 ID - Nenadic2003 ER - TY - CHAP AU - Stapley, B. J. AU - Kelley, L. A. AU - Sternberg, M. J. E. PY - 2002 DA - 2002// TI - Predicting the sub-cellular location of proteins from text using support vector machines BT - Proceedings of PSB 2002 ID - Stapley2002 ER - TY - CHAP AU - Nenadic, G. AU - Rice, S. AU - Spasic, I. AU - Ananiadou, S. AU - Stapley, B. J. PY - 2003 DA - 2003// TI - Selecting text features for gene name classification: from documents to terms BT - Proceedings of the ACL 2003 Workshop on Natural Language Processing in Biomedicine, ACL 2003 UR - https://doi.org/10.3115/1118958.1118974 DO - 10.3115/1118958.1118974 ID - Nenadic2003 ER - TY - CHAP AU - Joachims, T. PY - 1998 DA - 1998// TI - Text categorization with support vector machines: learning many relevant features BT - Proceedings of 10th European Conference on Machine Learning PB - Springer-Verlag CY - Heidelberg ID - Joachims1998 ER - TY - STD TI - Regev Y, Finkelstein-Landau M, Feldman R, Gorodetsky M, Zheng X, Levy S, Charlab R, Lawrence C, Lippert RA, Zhang Q, Shatkay H: Rule-based extraction of experimental evidence in the biomedical domain: the KDD Cup 2002 (task 1).ACM SIGKDD Explorations4(2):90–92. [http://portal.acm.org/citation.cfm?id=772874] 10.1145/772862.772874 UR - http://portal.acm.org/citation.cfm?id=772874 ID - ref16 ER - TY - CHAP AU - Voutilainen, A. AU - Heikkila, J. ED - Fries et, a. l. PY - 1993 DA - 1993// TI - An English Constraint Grammar (ENGCG) a surface-syntactic parser of English BT - Creating and Using English language corpora PB - Rodopi CY - Amsterdam/Atlanta ID - Voutilainen1993 ER - TY - CHAP AU - McCray, A. A. AU - Browne, A. AU - Bodenreider, O. PY - 2002 DA - 2002// TI - The lexical properties of Gene ontology (GO) BT - Proceedings of AMIA 2002 ID - McCray2002 ER - TY - CHAP AU - Verspoor, C. M. AU - Joslyn, C. AU - Papcun, G. PY - 2003 DA - 2003// TI - The Gene ontology as a source of lexical semantic knowledge for a biological natural language processing application BT - Proceedings of Workshop on Text Analysis and Search for Bioinformatics, SIGIR 03 ID - Verspoor2003 ER - TY - JOUR AU - Krauthammer, M. AU - Nenadic, G. PY - 2004 DA - 2004// TI - Term identification in the biomedical literature JO - Journal of Biomedical Informatics VL - 37 UR - https://doi.org/10.1016/j.jbi.2004.08.004 DO - 10.1016/j.jbi.2004.08.004 ID - Krauthammer2004 ER - TY - JOUR AU - Frantzi, K. AU - Ananiadou, S. AU - Mima, H. PY - 2000 DA - 2000// TI - Automatic recognition of multi-word terms: the C-value/NC-value method JO - International Journal on Digital Libraries VL - 3 UR - https://doi.org/10.1007/s007999900023 DO - 10.1007/s007999900023 ID - Frantzi2000 ER - TY - CHAP AU - Ananiadou, S. AU - Albert, S. AU - Schuhmann, D. PY - 2000 DA - 2000// TI - Evaluation of Automatic Term Recognition of Nuclear Receptors from Medline BT - Genome Informatics Series ID - Ananiadou2000 ER - TY - CHAP AU - Nenadic, G. AU - Spasic, I. AU - Ananiadou, S. PY - 2002 DA - 2002// TI - Automatic acronym acquisition and term variation management within domain-specific texts BT - Proceedings of LREC-3, Las Palmas ID - Nenadic2002 ER - TY - CHAP AU - Nenadic, G. AU - Ananiadou, S. AU - McNaught, J. PY - 2004 DA - 2004// TI - Enhancing automatic term recognition through recognition of variation BT - Proceedings of COLING 2004 ID - Nenadic2004 ER - TY - BOOK AU - Baeza-Yates, R. AU - Ribeiro-Neto, B. PY - 1999 DA - 1999// TI - Modern Information Retrieval ID - Baeza-Yates1999 ER - TY - JOUR AU - Leopold, E. AU - Kindermann, J. PY - 2002 DA - 2002// TI - Text Categorization with Support Vector Machines. How to Represent Texts in Input Space JO - Machine Learning VL - 46 UR - https://doi.org/10.1023/A:1012491419635 DO - 10.1023/A:1012491419635 ID - Leopold2002 ER - TY - CHAP AU - Joachims, T. ED - Schölkopf, B. ED - Burges, C. ED - Smola, A. PY - 1999 DA - 1999// TI - Making large-Scale SVM Learning Practical BT - Advances in Kernel Methods – Support Vector Learning ID - Joachims1999 ER - TY - JOUR AU - Chiba, N. AU - Parvin, J. D. PY - 2002 DA - 2002// TI - The BRCA1 and BARD1 association with the RNA polymerase II holoenzyme JO - Cancer Res VL - 62 ID - Chiba2002 ER - TY - CHAP AU - Nenadic, G. AU - Spasic, I. AU - Ananiadou, S. PY - 2004 DA - 2004// TI - Automatic discovery of term similarities using pattern mining BT - Terminology 10:1 ID - Nenadic2004 ER - TY - CHAP AU - Morgan, A. AU - Hirschman, L. AU - Yeh, A. AU - Colosimo, M. PY - 2003 DA - 2003// TI - Gene name extraction using FlyBase resources BT - Proceedings of the ACL 2003 Workshop on Natural Language Processing in Biomedicine. ACL 2003 UR - https://doi.org/10.3115/1118958.1118959 DO - 10.3115/1118958.1118959 ID - Morgan2003 ER -