Table 1 Comparison of cluster contents between D2 and CLU (new clustering program) results. 10 clusters, produced by d2 from the benchmark10000 dataset with numbers from 1 to 10 are compared against corresponding CLU clusters. Due to the differences in algorithms, clusters containing the same ESTs have different numbers. In two cases of 10 (clusters #5 and #7) CLU clusters are bigger. Following alignment (available from the author upon request) confirms that additional ESTs belong to the corresponding clusters and align well.
Stack Cluster # | size | ESTs | Clu Cluster # | size | ESTs | difference |
|---|---|---|---|---|---|---|
1 | 8 | T27877 H37900 H38651 H38682 H84662 H85197 H89941 H84148 | 3145 | 8 | T27877 H37900 H38651 H38682 H84662 H85197 H89941 H84148 | Â |
2 | 2 | T27878 AA489885 | 7763 | 2 | T27878 AA489885 | Â |
3 | 2 | T27889 AA176889 | 5505 | 2 | T27889 AA176889 | Â |
4 | 2 | T27893 H84548 | 1040 | 2 | T27893 H84548 | Â |
5 | 3 | T27897 H37921 H40706 | 2240 | 4 | T27897 H37921 H40706 H92170 | H92170 |
6 | 6 | T27899 H87764 H86519 AA057721 AA167121 AA489902 | 7780 | 6 | T27899 H87764 H86519 AA057721 AA167121 AA489902 | Â |
7 | 2 | T27904 AA063476 | 4532 | 4 | T27904 AA063476 H40639 H38672 | H40639 H38672 |
8 | 4 | T27908 H37775 H85549 H86568 | 4051 | 5 | T27908 H37775 H85549 H86568 H40669 | Â |
9 | 3 | T27910 H80800 AA062794 | 4444 | 3 | T27910 H80800 AA062794 | Â |
10 | 6 | T27914 AA063475 AA057847 AA174102 AA219283 AA219467 | 6434 | 6 | T27914 AA063475 AA057847 AA174102 AA219283 AA219467 | Â |