Table 4 List of some workflows. .
From: Web services and workflow management for biological resources
Workflow name and description | Inputs | Outputs |
|---|---|---|
GetMutationsByIntron Retrieves all mutations occurring in the specified intron | lib: database name ('tp53_iarc') intron: intron where mutation occurs (integer) | ids: list of mutations' ids mutations: full records |
GetTP53MutationsByIntronAndEffect Retrieves all TP53 mutations occurring in the specified intron and having the specified effect | intron: intron where mutation occurs (integer) effect: mutation effect (fs, missense, na, nonsense, other, silent, splice) | ids: list of mutations' ids mutations: full records |
GetTP53MutationsByIntronAndEffect2 Retrieves all TP53 mutations that: • occurs in the specified intron OR have the specified effect • occurs in the specified intron AND have the specified effect • occurs in the specified intron BUT DOES NOT have the specified effect | intron: intron where mutation occurs (integer) effect: mutation effect (fs, missense, na, nonsense, other, silent, splice) | mutation_in_or: full records of mutations retrieved by applying a logical OR to results obtained by single queries mutation_in_but_not: full records of mutations retrieved by removing results of the second query from results of the first query mutation_in_and: full records of mutations retrieved by applying a logical AND to results obtained by single queries |
GetBacteriaByName Retrieves full descriptions of bacteria strains from specified CABRI catalogues, given the scientific name | catalogues: name(s) of CABRI bacteria catalogues scientific name: genus and species of the desired strains | bacteria_strains_description: full records of selected bacteria strains |