From: Fast-Find: A novel computational approach to analyzing combinatorial motifs
Number of cDNAs with potential alternative 3' ends and search patterns | ||
---|---|---|
Search pattern | Number of Patterns | Number of cDNAs |
A. Base composition | ||
CstF64; U> = 4, G< = 4, A+C = 0 ;length = 8 | 163 | 276 |
SXL; U> = 15, G< = 2, A+C = 0 ;length = 17 | 154 | 5 |
SXL1; U> = 8, G+A+C = 0 ;length = 8 | 1 | 27 |
SXL2; U> = 10, G< = 2, A+C = 0 ;length = 12 | 79 | 25 |
B. Degenerate motifs | ||
hnRNP F/H/H' (core); GGGA | 1 | 232 |
hnRNP F/H/H'; GGGGA | 1 | 78 |
Rbp1; DCADCUUA | 9 | 47 |
PSI; RCYYCUURYRC | 12 | 8 |
Rbp9; UUUNUUUU | 4 | 111 |
C. Combinatorial motifs | ||
CstF64 + SXL | 25,102 | 5^{#} |
CstF64 + hnRNP F/H/H' (core) | 163 | 178* |
CstF64 + hnRNP F/H/H' | 163 | 59** |
SXL + hnRNP F/H/H' (core) | 154 | 4*** |
PSI + hnRNP F/H/H' (core) | 12 | 8*** |