Table 3 Overlap R(A, B) between sets of genes marked as differentially expressed after pre-processing with different methods. p- and q-values for the significance of difference in expression between samples from the AML dataset with recurrent FLT3 mutation and samples without recurrent FLT3 mutation were calculated. The numbers on the diagonal represents the number of probe sets marked as differentially expressed after application of each method.

From: The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies