IsoSVM – Distinguishing isoforms and paralogs on the protein level

BMC Bioinformatics

Table 2 Performance of the SVM classifier (accuracy/precision) on four testing scenarios.

Full-length-sequence (canonical testing dataset)
Accuracy	Precision	True Positives	True Negatives	False Positives	False Negatives
99.63%	99.37%	1899	1889	12	2
Selected *Xenopus* EST data
Accuracy	Precision	True Positives	True Negatives	False Positives	False Negatives
97.93%	99.23%	129	155	1	8
Homologous-regions-only
Accuracy	Precision	True Positives	True Negatives	False Positives	False Negatives
98.98%	97.57%	2529	5455	63	19
ABC protein homologous-regions-only
Accuracy	Precision	True Positives	True Negatives	False Positives	False Negatives
-	95.65%	110	-	5	-

ISSN: 1471-2105