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Table 2 Parameters derived from the SSPP representation

From: Selection of antisense oligonucleotides based on multiple predicted target mRNA structures

Parameter Definition
f mean Mean, f m e a n = 1 n i = 1 n p i MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGMbGzdaWgaaWcbaGaemyBa0MaemyzauMaemyyaeMaemOBa4gabeaakiabg2da9maalaaabaGaeGymaedabaGaemOBa4gaamaaqahabaGaemiCaa3aaSbaaSqaaiabdMgaPbqabaaabaGaemyAaKMaeyypa0JaeGymaedabaGaemOBa4ganiabggHiLdaaaa@40E5@
f rms Root mean square, f r m s = 1 n i = 1 n ( p i f m e a n ) 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGMbGzdaWgaaWcbaGaemOCaiNaemyBa0Maem4Camhabeaakiabg2da9maakaaabaWaaSaaaeaacqaIXaqmaeaacqWGUbGBaaWaaabCaeaadaqadaqaaiabdchaWnaaBaaaleaacqWGPbqAaeqaaOGaeyOeI0IaemOzay2aaSbaaSqaaiabd2gaTjabdwgaLjabdggaHjabd6gaUbqabaaakiaawIcacaGLPaaadaahaaWcbeqaaiabikdaYaaaaeaacqWGPbqAcqGH9aqpcqaIXaqmaeaacqWGUbGBa0GaeyyeIuoaaSqabaaaaa@4A69@
f max Maximum, f max = max i = 1 , , n { p i } MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGMbGzdaWgaaWcbaGagiyBa0MaeiyyaeMaeiiEaGhabeaakiabg2da9maaxababaGagiyBa0MaeiyyaeMaeiiEaGhaleaacqWGPbqAcqGH9aqpcqaIXaqmcqGGSaalcqWIVlctcqGGSaalcqWGUbGBaeqaaOWaaiWaaeaacqWGWbaCdaWgaaWcbaGaemyAaKgabeaaaOGaay5Eaiaaw2haaaaa@455B@
f impulse Impulse factor, f i m p u l s e = f max f m e a n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGMbGzdaWgaaWcbaGaemyAaKMaemyBa0MaemiCaaNaemyDauNaemiBaWMaem4CamNaemyzaugabeaakiabg2da9maalaaabaGaemOzay2aaSbaaSqaaiGbc2gaTjabcggaHjabcIha4bqabaaakeaacqWGMbGzdaWgaaWcbaGaemyBa0MaemyzauMaemyyaeMaemOBa4gabeaaaaaaaa@45A2@
f peak Peak factor, f p e a k = f max f r m s MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGMbGzdaWgaaWcbaGaemiCaaNaemyzauMaemyyaeMaem4AaSgabeaakiabg2da9maalaaabaGaemOzay2aaSbaaSqaaiGbc2gaTjabcggaHjabcIha4bqabaaakeaacqWGMbGzdaWgaaWcbaGaemOCaiNaemyBa0Maem4Camhabeaaaaaaaa@4024@
f wave Wave factor, f w a v e = f r m s f m e a n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGMbGzdaWgaaWcbaGaem4DaCNaemyyaeMaemODayNaemyzaugabeaakiabg2da9maalaaabaGaemOzay2aaSbaaSqaaiabdkhaYjabd2gaTjabdohaZbqabaaakeaacqWGMbGzdaWgaaWcbaGaemyBa0MaemyzauMaemyyaeMaemOBa4gabeaaaaaaaa@4188@
f difference Mean of difference, f d i f f e r e n c e = 1 n 1 i = 1 n 1 | p i p i + 1 | MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGMbGzdaWgaaWcbaGaemizaqMaemyAaKMaemOzayMaemOzayMaemyzauMaemOCaiNaemyzauMaemOBa4Maem4yamMaemyzaugabeaakiabg2da9maalaaabaGaeGymaedabaGaemOBa4MaeyOeI0IaeGymaedaamaaqahabaWaaqWaaeaacqWGWbaCdaWgaaWcbaGaemyAaKgabeaakiabgkHiTiabdchaWnaaBaaaleaacqWGPbqAcqGHRaWkcqaIXaqmaeqaaaGccaGLhWUaayjcSdaaleaacqWGPbqAcqGH9aqpcqaIXaqmaeaacqWGUbGBcqGHsislcqaIXaqma0GaeyyeIuoaaaa@5599@