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# Table 3 Parameters derived from the SUP sequence representation

From: Selection of antisense oligonucleotides based on multiple predicted target mRNA structures

Parameter | Definition |
---|---|

| Number of bases in single-stranded region |

| Number of bases in double-stranded region |

| Percentage of bases in single-stranded region to the length of ODN |

| Percentage of bases in double-stranded region to the length of ODN |

| Maximum length of consecutive subsequence in single-stranded region |

| Maximum length of consecutive subsequence in base pairing |

| Maximum length of consecutive subsequence in single-stranded region counting from 5' terminal |

| Maximum length of consecutive subsequence in base pairing counting from 5' terminal |

| Maximum length of consecutive subsequence in single-stranded region counting from 3' terminal |

| Maximum length of consecutive subsequence in base pairing counting from 3' terminal |

| Structure consistency, {f}_{SC}=\frac{1}{n\xe2\u02c6\u20191}{\displaystyle \underset{i=1}{\overset{n\xe2\u02c6\u20191}{\xe2\u02c6\u2018}}E({S}_{i},{S}_{i\xe2\u02c6\u20191})}, where E(x,y)=\{\begin{array}{ll}1,\hfill & x=y\xe2\u2030\text{'}\text{U}\text{'}\hfill \\ 0,\hfill & x=\text{'}\text{U}\text{'},ory=\text{'}\text{U}\text{'}\hfill \\ \text{-1}\hfill & x\xe2\u2030y,x\xe2\u2030\text{'}\text{S}\text{'},y\xe2\u2030\text{'}\text{P}\text{'}\hfill \end{array} |