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Table 1 Prediction accuracy comparison with different kernel functions and parameters. The results were obtained by 5-fold cross-validation.

From: Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information

SVM model

Kernel function

Parameters

Accuracy (%)

1

Polynomial

α = 1, β = 1, d = 2

59.0

2

Polynomial

α = 1, β = 1, d = 5

60.5

3

RBF

γ = 0.01, C = 2.0

62.8

4

RBF

γ = 0.06, C = 2.0

60.5

5

RBF

γ = 0.2, C = 1.0

62.6