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Table 2 Correlations between the expression values. Pearson correlation between the expression values calculated with six different methods. The average signal intensity from all 22746 probe sets from the three control chips was used.

From: How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results

 

MAS5

dCHip PMMM

dCHip PM

RMA

GC-RMA

dCHip PMMM

0.9831

    

dCHip PM

0.9846

0.9889

   

RMA

0.9913

0.9778

0.9862

  

GC-RMA

0.9435

0.9325

0.9391

0.9417

 

PDNN

0.9767

0.9736

0.9793

0.9764

0.9534

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BMC Bioinformatics

ISSN: 1471-2105

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