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Table 3 Minimum signal. Signal intensity from the RNA spike-in experiments at a concentration (1 pmol) where the spiked-in concentrations were significant different from the background. The number (#) and percentage (%) genes below the minimal signal (Min. signal) is obtained from non-transformed data.

From: How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results

 

MAS5

dCHip PMMM

dCHip PM

RMA

GC-RMA

PDNN

Min signal

40.4

46.5

112.2

59.2

27.4

261.3

# genes

11109

2651

3895

6750

9174

2651

% genes

48.8

11.7

17.1

29.7

40.3

11.7