Table 1 A comparison of pA predictions for prokaryotic species. SIGI-HMM was used to identify GIs. The accumulated length of genes constituting GIs is given in percent in column pA DNA. This transformation allows to compare results with entries of column Foreign DNA, which was reproduced from [41]. The column Length lists the genome size im Mbp.
From: Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
Species | Length [Mbp] | Foreign DNA [%] | pA DNA [%] |
|---|---|---|---|
Escherichia coli K-12 | 4.64 | 12.8 | 9.3 |
Bacillus subtilis | 4.21 | 7.5 | 7.6 |
Synechocystis PCC6803 | 3.57 | 16.6 | 5.0 |
Deinococcus radiodurans | 2.65 | 5.2 | 4.8 |
Archaeoglobus fulgidus | 2.18 | 5.2 | 4.2 |
Aeropyrum pernix | 1.67 | 3.2 | 1.5 |
Thermotoga maritima | 1.86 | 6.4 | 1.0 |
Pyrococcus horikoshii | 1.74 | 2.7 | 2.9 |
Methanobacterium thermoautotrophicum | 1.75 | 9.4 | 1.6 |
Haemophilus influenzas Rd KW20 | 1.83 | 4.5 | 1.6 |
Helicobacter pylori 26695 | 1.67 | 6.2 | 0.0 |
Aquifex aeolicus | 1.55 | 9.6 | 1.8 |
Methanocaldococcus jannaschii | 1.66 | 1.3 | 0.2 |
Treponema pallidum | 1.14 | 3.6 | 0.3 |
Borrelia burgdorferi | 0.91 | 0.1 | 8.5 |
Rickettsia prowazekii | 1.11 | 0.0 | 0.0 |
Mycoplasma pneumoniae | 0.82 | 11.6 | 3.8 |
Mycoplasma genitalium | 0.58 | 0.0 | 0.2 |