Table 2 Summary of the results from simulated data under Model A1. The Likelihood Ratio Tests were performed between Model A1 versus Model A2 using the volume partition at the 5% significance level. The table also shows the percentage of sites predicted to be in each site class.
From: Identification of physicochemical selective pressure on protein encoding nucleotide sequences
Data Set | Partition | % of significant LRT tests* | % of sites in each category | |||
|---|---|---|---|---|---|---|
ω≤1,γ≤1 | ω≤1,γ>1 | ω>1,γ≤1 | ω>1,γ>1 | |||
Set 1 (ω = 0.4,γ = 4.0) | Volume | 100 | 0.00 | 0.99 | 0.00 | 0.01 |
Hydrophobicity | 100 | 0.27 | 0.41 | 0.08 | 0.24 | |
Set 2 (ω = 4,γ = 0.4) | Volume | 0 | 0.00 | 0.00 | 0.97 | 0.03 |
Hydrophobicity | 100 | 0.08 | 0.11 | 0.17 | 0.64 | |
Set 3 (ω = γ = 0.4) | Volume | 4 | 0.99 | 0.00 | 0.00 | 0.01 |
Hydrophobicity | 1 | 0.99 | 0.00 | 0.01 | 0.00 | |
Set 4 (ω = γ = 4) | Volume | 100 | 0.00 | 0.00 | 0.00 | 1.00 |
Hydrophobicity | 100 | 0.00 | 0.00 | 0.00 | 1.00 | |