From: Identification of physicochemical selective pressure on protein encoding nucleotide sequences
Data set/Model | loglikelihood | κ | ω | γ | proportions |
---|---|---|---|---|---|
MHC Class I | |||||
Volume | |||||
Model A1 | -2463.35 | 2.86 | 0.22, 8.74 | 0.00, 3.47 | Prob (ω0, γ0) = 0.73 |
Prob (ω0, γ1) = 0.17 | |||||
Prob (ω1, γ0) = 0.07 | |||||
Prob (ω1, γ1) = 0.03 | |||||
Model A2 | -2474.61 | 2.84 | 0.23, 9.30 | 0.53 | Prob (ω0, γ0) = 0.90 |
Prob (ω1, γ0) = 0.10 | |||||
Hydrophobicity | |||||
Model A1 | -2464.89 | 2.81 | 0.14, 9.94 | 0.12, 5.48 | Prob (ω0, γ0) = 0.80 |
Prob (ω0, γ1) = 0.09 | |||||
Prob (ω1, γ0) = 0.07 | |||||
Prob (ω1, γ1) = 0.04 | |||||
Model A2 | -2505.65 | 2.59 | 0.09, 9.12 | 0.62 | Prob (ω0, γ0) = 0.87 |
Prob (ω1, γ0) = 0.13 | |||||
Charge | |||||
Model A1 | -2470.99 | 2.75 | 0.00, 5.46 | 0.19, 5.48 | Prob (ω0, γ0) = 0.76 |
Prob (ω0, γ1) = 0.05 | |||||
Prob (ω1, γ0)) = 0.11 | |||||
Prob (ω1, γ1) = 0.08 | |||||
Model A2 | -2515.343693 | 2.59 | 0.37,18.77 | 0.65 | Prob (ω0, γ0) = 0.94 |
Prob (ω1, γ0) = 0.06 | |||||
Polarity | |||||
Model A1 | -2470.149113 | 2.93 | 0.17, 6.99 | 0.02, 3.85 | Prob (ω0, γ0) = 0.75 |
Prob (ω0, γ1) = 0.12 | |||||
Prob (ω1, γ0) = 0.04 | |||||
Prob (ω1, γ1) = 0.08 | |||||
Model A2 | -2491.533373 | 2.89 | 0.18,7.75 | 0.61 | Prob (ω0, γ0) = 0.88 |
Prob (ω1, γ0) = 0.12 |