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Figure 3 | BMC Bioinformatics

Figure 3

From: 2DDB – a bioinformatics solution for analysis of quantitative proteomics data

Figure 3

Color Grid. The Color-Grid. Proteins are displayed as rows and group sets are displays as columns. The color in each square indicates the identity of the group that the protein belongs to in that group set. The 45 significantly regulated proteins from the experiment discussed in the text is exported into Protein Explorer. Protein Explorer divided the 45 proteins into 7 group sets with between 1 and 45 groups in each group set. The experiment group-set in this case is uninformative as all proteins are from the same experiment. The same is true for both the sequence group set and the MID group set since there are as many groups as there are proteins. The prophet_ratio group set indicates whether the protein was up-regulated or down regulated, and the three go-based group sets are based on MID GO annotations. Only proteins in the cytoplasm (blue group set cellular_component_l) and nucleus (red group set cellular_component_l) are displayed in this image because of limited space).

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