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Table 1 Number of genomes and protein encoding genes in the SEED database at the time of analysis. The two environmental samples are the Sargasso Sea and Acid Mine Drainage metagenomes.

From: An application of statistics to comparative metagenomics

Domain Number of Genomes Proteins Percent of all proteins
Archaea 37 61,709 2
Bacteria 550 1,187,180 44
Eukarya 556 482,760 18
Environmental Samples (2) 968,149 36
Total 1,145 2,699,798 100