Table 2 Phylosubsystems that are overrepresented in AMD dataset versus SEED dataset with 99% confidence at a sample size of 145,000 proteins.
From: An application of statistics to comparative metagenomics
# | Subsystem | Classification | Domain |
|---|---|---|---|
1 | Arginine degradation | Amino Acids and Derivatives | Archaea |
2 | Chorismate Synthesis | Amino Acids and Derivatives | Archaea |
3 | Histidine Degradation | Amino Acids and Derivatives | Archaea |
4 | Leucine Biosynthesis | Amino Acids and Derivatives | Archaea |
5 | Calvin-Benson cycle | Carbohydrates | Archaea |
6 | Embden-Meyerhof and Gluconeogenesis | Carbohydrates | Archaea |
7 | Methylcitrate cycle | Carbohydrates | Archaea |
8 | Riboflavin metabolism | Cofactors, Vitamins, Prosthetic Groups, Pigments | Archaea |
9 | Conserved tRNAs | Experimental Subsystems | Archaea |
10 | Fatty acid metabolism | Fatty Acids and Lipids | Archaea |
11 | Fatty acid oxidation pathway | Fatty Acids and Lipids | Archaea |
12 | de-novo Purine Biosynthesis | Nucleosides and Nucleotides | Archaea |
13 | de-novo Pyrimidine Biosynthesis | Nucleosides and Nucleotides | Archaea |
14 | Pyrimidine conversions | Nucleosides and Nucleotides | Archaea |
15 | Ribosome LSU (eukaryotic and archaeal) | Protein Metabolism | Archaea |
16 | Ribosome SSU (eukaryotic and archaeal) | Protein Metabolism | Archaea |
17 | Translation initiation factors (eukaryotic and archaeal) | Protein Metabolism | Archaea |
18 | tRNA aminoacylation | RNA metabolism | Bacteria |
19 | TTSS transporters | Virulence | Bacteria |