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Table 3 Presence of Glycine, Serine, and Threonine subsystems in the AMD, SEED, and Sargasso databases. The table is a subset of the data from the supplemental data [see Additional File 3].

From: An application of statistics to comparative metagenomics

No1 Name2 K3 Classification4 # AMD5 # SEED6 # SS7 AMD per million8 SEED per million9 SS per million10 Prev.11
206 Glycine synthesis A Amino
Acids
Alanine, serine,
and glycine
7 24 34 923 19 35 Sargasso
207 Glycine synthesis B    2 492 483 264 390 503 Sargasso
426 Serine biosynthesis A    13 166 244 1713 132 254 Sargasso
427 Serine biosynthesis B    7 1545 1257 923 1224 1309 Sargasso
475 Threonine synthesis B   K, T, M, and C 8 1070 952 1054 848 991 Sargasso
  1. 1Subsystem number
  2. 2Subsystem name as designated by the curator
  3. 3K: Kingdom (A: Archaea; B: Bacteria; E: Eukaryota)
  4. 4Classification of the subsystem. K, T, M, and C: Lysine, threonine, methionine and cysteine.
  5. 5Number of proteins present in the AMD sample
  6. 6Number of proteins present in the SEED sample
  7. 7Number of proteins present in the Sargasso Sea sample (SS).
  8. 8–10Number of proteins present in the AMD, SEED, and Sargasso samples normalized per million proteins in each sample.
  9. 11Statistically significant prevalence. Prev.: prevalence.