Table 1 Statistics on Transcript Pattern Variant Data presented in this work.
| Â | Human | Mouse |
|---|---|---|
Genes | 7669 | 5862 |
Splice patterns (& average number per gene) | 41201 (5.4) | 27132 (4.6) |
Transcript patterns (& average number per gene) | 12559 (1.6) | 7755 (1.3) |
PolyA sites as detected by AltTrans pipeline1 (& average number per gene) | 10221 (1.3) | 6976 (1.19) |
AltTrans polyA sites that are "skipped" | 2468 | 1113 |
ATD PolyA sites as detected by AltTrans and AltPAS2 pipelines (& average number per gene) | 17104 (2.2) | 9451 (1.61) |
ATD polyA sites that are "skipped" | 5459 | 2214 |
Genes showing splice events (as seen among the splice patterns) | 5672 (74%) | 3825 (65%) |
Genes showing multiple polyA sites (considering the polyA sites from both AltTrans and AltPAS)3 | 4603 (60%) | 2456 (42%) |
Genes showing both splice events and multiple polyA sites (considering the polyA sites from both AltTrans and AltPAS) | 3523 (46%) | 1718 (29%) |
Genes showing multiple polyA sites (considering only the AltTrans polyA sites)4 | 2053 (27%) | 1026 (18%) |
Genes showing both splice events and polyA events (considering only the AltTrans polyA sites) | 1679 (22%) | 736 (13%) |
Genes showing >= 2 Splice Patterns | 6859 | 4989 |
Genes showing >= 2 Transcript patterns | 3179 | 1548 |
EST/mRNA sequences confirming Splice Patterns | 837828 | 726916 |
EST/mRNA sequences confirming Transcript Patterns | 38731 | 18045 |