Skip to main content

Table 4 The outliers determined by the additive method and the SVRMHC method for H2-Db, H2-Kb and H2-Kk. Common outliers determined by both methods are italicized.

From: Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models

H2-Db
Outliers determined by Additive method Outliers determined by SVRMHC method
  True pIC50 Predicted pIC50 (Additive) Predicted pIC50 (SVRMHC)   True pIC50 Predicted pIC50 (Additive) Predicted pIC50 (SVRMHC)
QLPPNSLLI 3.53 6.19 7.06 QLPPNSLLI 3.53 6.19 7.06
GFKSNFNKI 3.36 6.30 5.28 TAGANPMDL 4.66 4.84 7.30
IKPSNSEDL 5.54 7.70 6.33 CKGVNKEYL 7.41 7.13 5.14
TALANTIEV 8.44 5.75 7.02     
TGKLNLENL 4.75 7.10 6.47     
AEDTNVSLI 3.36 5.73 4.62     
H2-Kb
Outliers determined by Additive method Outliers determined by SVRMHC method
  True pIC50 Predicted pIC50 (Additive) Predicted pIC50 (SVRMHC)   True pIC50 Predicted pIC50 (Additive) Predicted pIC50 (SVRMHC)
NTVVFDAL 3.81 6.97 7.44 NTVVFDAL 3.81 6.97 7.44
LQQRYSRL 9.22 5.80 6.42 LQQRYSRL 9.22 5.80 6.42
SKLQYKII 3.81 6.96 6.66 SKLQYKII 3.81 6.96 6.66
QPQNYLRL 4.29 9.49 6.61 QPQNYLRL 4.29 9.49 6.61
MGLIYNRM 8.34 6.21 7.56 VLLDYQGM 5.48 5.62 7.95
IIFLFILL 5.13 7.85 6.36 SIILFLPL 9.00 8.81 6.72
MWYWGPSL 5.13 7.58 7.11     
H2-Kk
Outliers determined by Additive method Outliers determined by SVRMHC method
  True pIC50 Predicted pIC50 (Additive) Predicted pIC50 (SVRMHC) (none)
FESTGNLE 4.71 6.56 4.39     
FRSTGNLI 4.19 6.76 4.44