Table 1 Taxa currently included in PhIGs
From: A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
| Species | Taxonomy | Genome source | URL |
|---|---|---|---|
| Homo sapiens | Primates | Ensembl 22.34d.1 | http://www.ensembl.org |
| Pan troglodytes | Primates | Ensembl 22.1.1 | http://www.ensembl.org |
| Mus musculus | Rodentia | Ensembl 22.32b.1 | http://www.ensembl.org |
| Rattus norvegicus | Rodentia | Ensembl 22.3b.1 | http://www.ensembl.org |
| Gallus gallus | Aves | Ensembl 22.1.1 | http://www.ensembl.org |
| Takifugu rubripes | Pisces | Ensembl 22.2c.1 | http://www.ensembl.org |
| Danio rerio | Pisces | Ensembl 22.3b.1 | http://www.ensembl.org |
| Ciona intestinalis | Urochordata | JGI ciona4 | http://genome.jgi-psf.org |
| Drosophila melanogaster | Arthropoda | Ensembl 22.3a.1 | http://www.ensembl.org |
| Anopheles gambiae | Arthropoda | Ensembl 22.2b.1 | http://www.ensembl.org |
| Caenorhabditis elegans | Nematoda | Ensembl 22.116a.1 | http://www.ensembl.org |
| Caenorhabditis briggsae | Nematoda | Ensembl 24.24.1 | http://www.ensembl.org |
| Ustilago maydis | Basidiomycota | Broad release 2 | http://www.broad.mit.edu/annotation/fungi/fgi/ |
| Phanerochaete chrysosporium | Basidiomycota | JGI whiterot1 | http://genome.jgi-psf.org |
| Cryptococcus neoformans | Basidiomycota | TIGR CNA1 | http://www.tigr.org/tdb/fungal/ |
| Schizosaccharomyces pombe | Ascomycota | Pompep version 19 | http://www.sanger.ac.uk/Projects/S_pombe/ |
| Aspergillus nidulans | Ascomycota | Broad release 1.3 | http://www.broad.mit.edu/annotation/fungi/fgi/ |
| Fusarium graminearum | Ascomycota | Broad release 1.1 | http://www.broad.mit.edu/annotation/fungi/fgi/ |
| Trichoderma reesei | Ascomycota | JGI trire1 | http://genome.jgi-psf.org |
| Magnaporthe grisea | Ascomycota | Broad release 2.4 | http://www.broad.mit.edu/annotation/fungi/fgi/ |
| Neurospora crassa | Ascomycota | Broad release 3 | http://www.broad.mit.edu/annotation/fungi/fgi/ |
| Candida albicans | Ascomycota | Stanford release 19 | http://www-sequence.stanford.edu/group/candida/ |
| Saccharomyces cerevisiae | Ascomycota | Saccharomyces Genome Database | http://www.yeastgenome.org/ |