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Table 3 20 features ranked on top using permutation test Z-scores. The features were ranked according to the absolute values of their permutation test Z-scores (see text). Name prefixes " PSSM_", "freq_", "PHD_" and " PSI_" denote PSI-BLAST profile based, amino acid frequency based, PHDsec prediction based, and PSIPRED prediction based features, respectively. PSSM_41 and PSSM_42 denote the two features derived from the last two columns of a PSI-BLAST profile (-Q option), i.e. information per position and relative weight of gapless real matches to pseudocounts.

From: Length-dependent prediction of protein intrinsic disorder

  VSL2-S VSL2-L
rank     
  feature name Z-score feature name Z-score
1 freq_spacer 166.3 K 2 -entropy -265.6
2 K 2 -entropy -91.4 PSSM_P 257.2
3 PSI_C 83.6 PSSM_S 228.3
4 PHD_L 81.2 PSSM_K 219.3
5 PSSM_S 78.3 PSSM_E 216.0
6 PSSM_Q 74.2 PSI_C 206.2
7 hydrophobicity -70.5 PSSM_Q 189.3
8 freq_H 70.3 hydrophobicity -183.5
9 PSSM_E 64.9 PSSM_F -174.8
10 PSSM_K 64.7 PHD_L 170.8
11 PSSM_42 -63.7 PSSM_T 161.9
12 flexibility 58.4 PSSM_L -156.9
13 PSSM_N 56.1 PSSM_I -144.6
14 PSSM_P 51.7 freq_P 138.8
15 PSSM_R 46.3 flexibility 126.0
16 PSSM_I -46.2 freq_E 122.0
17 PSSM_D 44.2 PSSM_D 99.3
18 PSSM_V -42.9 PSSM_M -97.2
19 PSSM_H 42.9 freq_K 96.2
20 PSSM_41 -40.9 freq_I -90.0