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Table 3 Binary matrix representing the presence of motifs in gene promoters.G1 through G8 are hypothetical genes and M1 through M5 are hypothetical motifs. A 1 in cell (i, j) indicates the presence of motif M j in the promoter of gene G i . A 0 indicates a corresponding absence.

From: XcisClique: analysis of regulatory bicliques

 

M1

M2

M3

M4

M5

G1

1

1

0

0

0

G2

1

1

1

1

1

G3

0

0

0

0

0

G4

0

0

1

1

1

G5

0

0

0

0

0

G6

0

0

1

1

1

G7

0

0

0

0

0

G8

1

1

1

1

1

  1. Bicliques
  2. ⟨M1,M2,G1,G2,G8⟩
  3. ⟨M3, M4, M5, G2, G4, G6, G8 ⟩
  4. ⟨M1, M2, M3, M4, M5, G2, G8 ⟩