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Figure 2 | BMC Bioinformatics

Figure 2

From: MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers

Figure 2

Screenshots of MIDAS. (a) A region of chromosome 11 showing 30 markers. Green lines indicate relative position of markers. Yellow intensity indicates distance between pairwise markers. Placing the mouse over a feature provides details. (b) A pairwise plot for two microsatellites (zoomed in). Significant results are boxed in red (D' ≥ 0) or blue (D'<0). Placing the mouse cursor over an allele pair provides details and statistics and also plots that pair at the bottom right of the screen. Magnitude of |D'| is also plotted (middle right). (c) A SNP/microsatellite pair (zoomed in). This is identical to the microsatellite/microsatellite plot, but with only two alleles in one dimension. (d) A SNP/SNP pair (zoomed in). The plot is oriented to place the most frequent alleles for both SNPs in the top left. Statistics can be observed by placing the mouse over an allele pair. For SNPs a magnified plot is not shown, but the |D'| graph is still used (middle right).

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