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Figure 7 | BMC Bioinformatics

Figure 7

From: Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data

Figure 7

Sample MultiFinder output for the skeletal muscle gene expression cluster. Shown are just the top twenty most group specific motifs from the combined results from the four individual motif finders; many more motifs were discovered than are shown. The columns shown are as follows: group specificity score along with the motif ranking according to group specificity; site specificity score and the motif rank according to site specificity; number of motif occurrences found in the input sequence set; mean and standard deviation of the number of motif occurrences in each sequence within the input set; correlation coefficient for the most similar TRANSFAC motif and the name of the TRANSFAC motif; the motif finders (AlignACE (AA), BioProspector (BP), MDscan (MD) and MEME (ME)) that found the motif; whether a given motif contained a tandem repeat (TR) or palindromic repeat (PAL); and the sequence logo of the discovered motif.

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