From: Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data
(A) Without Block Filtering | ||||||||
---|---|---|---|---|---|---|---|---|
 | AlignACE | BioProspector | MDscan | MEME | ||||
 | Rank | Group | Rank | Group | Rank | Group | Rank | Group |
Mef2 | 1(4) | 2.40 × 10-16 | - | - | 1(5) | 5.00 × 10-8 | 4(5) | 6.90 × 10-12 |
Myf | 3(5) | 4.10 × 10-8 | - | - | 3(5) | 5.40 × 10-2 | 24(5) | 1.40 × 10-4 |
Sp1 | 4(2) | 3.80 × 10-8 | 1(4) | 1.10 × 10-8 | 2(5) | 1.70 × 10-3 | 6(5) | 3.60 × 10-11 |
SRF | 3(4) | 4.10 × 10-8 | - | - | - | - | 29(5) | 7.20 × 10-4 |
Tef | - | - | - | - | - | - | 63(5) | 2.20 × 10-2 |
Mean | 4.52 × 10-3 | 2.40 × 10-7 | 8.59 × 10-5 | 1.02 × 10-3 | ||||
Range | 6.90 × 10-1 | 7.20 × 10-8 | 1.40 × 10-1 | 2.50 × 10-24 | 2.80 × 10-1 | 1.40 × 10-9 | 3.20 × 10-1 | 1.00 × 10-29 |
(B) After Block Filtering | ||||||||
 | AlignACE | BioProspector | MDscan | MEME | ||||
 | Rank (26–38) | Group | Rank (1) | Group | Rank (4) | Group | Rank (112) | Group |
Mef2 | 1 | 2.40 × 10-16 | - | - | 1 | 5.00 × 10-8 | 4 | 6.90 × 10-12 |
Myf | 3 | 4.10 × 10-8 | - | - | 3 | 5.40 × 10-2 | 24 | 1.40 × 10-4 |
Sp1 | 4 | 3.80 × 10-8 | 1 | 1.10 × 10-8 | 2 | 1.70 × 10-3 | 6 | 3.60 × 10-11 |
SRF | 2 | 4.10 × 10-8 | - | - | - | - | 29 | 7.20 × 10-4 |
Tef | - | - | - | - | - | - | 49 | 2.20 × 10-2 |
Mean | 3.32 × 10-3 | 6.48 × 10-8 | 8.59 × 10-5 | 9.30 × 10-4 | ||||
Range | 6.90 × 10-1 | 6.50 × 10-7 | 1.00 × 10-1 | 2.50 × 10-24 | 2.80 × 10-1 | 1.40 × 10-9 | 3.70 × 10-1 | 1.00 × 10-29 |